Array platform AtTILE1
and AtSNPtile1
I Arabidopsis tiling array AtTILE1
Protocol for cDNA, genomic DNA sample labeling BioPrime.AtTILE1.doc
See ordering information for the reagents used in our protocol reagents.xls
AtTILE1 annotation attile1V7anno.RData
For GEO submission attile1.platform.RData
*** You will see a 90 degree rotation of the xy pos between our attile1V7anno.RData and the attile1.platform.RData.
*** This is because that attile1V7anno.RData is based on array design file 1lq, which rotates 90 degree with respect to scanning direction.
*** bpmap files and cdf files are in agreement with the scanning direction.
II Arabidopsis SNP-tiling array AtSNPtile1
Protocol for cDNA, genomic DNA sample labeling BioPrime.AtSNPtile1.doc
See ordering information for the reagents used in our protocol reagents.xls
Hybridization cocktail hybridizationBuffer.doc
AtSNPtile1 annotation for tiling probes atsnptile1.RData
AtSNPtile1 annotation for SNP probes snp.RData
*** Similar to attile1V7anno.RData, our atsnptile1.RData is based on array design file 1lq, which rotates 90 degree with respect to scanning direction.
*** bpmap files and cdf files are in agreement with the scanning direction.
Library files for AtSNPtile1 atSNPtilx520433_rev1.zip
*** These are old (rev1) and new (rev2) versions of library file
Files to generate the snp.RData 1) atSNPtilx520433_1lq.txt
Readme for atSNPtilx520433_1lq.txt file 1LQ_File.doc
Spatial correction for tiling probes readcel.tiling.R
Spatial correction for SNP probes readcel.snp.R
Scripts that read in CEL intensity to annotation, plus background correction extractProbeIntensity.R